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1.
J Sci Food Agric ; 104(7): 3842-3852, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38233738

RESUMO

BACKGROUND: Potato is the most important non-grain crop worldwide, whose quality characteristics are always affected by temporal and spatial variability. Knowledge of the performance consistency of quality characteristics over long periods could prove very important to identify which quality traits are less variable over time, and therefore provide greater guarantees of stability. In this research, variations in physicochemical and nutritional traits of tubers over five consecutive growing seasons of two potato genotypes (Arizona and Vogue) were monitored in two locations. RESULTS: Although qualitative performances of genotypes fluctuated across the seasons in both locations, two physicochemical traits (pH and dry matter content) and starch content showed less variability throughout the five seasons compared to total soluble solids and most of the nutritional traits (namely reducing sugars, citric acid, vitamin C, total phenolics and antioxidant capacity), which were considerably influenced by weather conditions. CONCLUSION: The results suggest that pH, dry matter content and starch content traits could be used advantageously in studies of temporal stability in potatoes. This approach could prove useful in providing scientific support for the setup of potato protected geographical identifications. © 2024 Society of Chemical Industry.


Assuntos
Solanum tuberosum , Solanum tuberosum/química , Amido/análise , Fenótipo , Tempo (Meteorologia) , Estações do Ano , Tubérculos/química
2.
Food Chem ; 428: 136756, 2023 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-37413837

RESUMO

Sicily (Italy) is the second producer of Opuntia ficus-indica (OFI) fruits after Mexico. To date, huge quantities of fruit are discarded during the selection for the fresh market, generating a large amount of by-product to be valorized. This study aimed to investigate on the composition of OFI discarded fruits from the main Sicilian productive areas, over two harvesting periods. Peel, seeds and whole fruit samples were characterized in terms of minerals and phenolic compounds through ICP-OES and HPLC-DAD-MS. Potassium, calcium and magnesium were the most abundant elements and peel samples showed the highest values. Seventeen phenolic compounds were detected in peel and whole fruit, including flavonoids, phenylpyruvic and hydroxycinnamic acids, while only phenolic acids were found in the seeds. A multivariate chemometric approach highlighted a correlation between the mineral and phenolic content and the different parts of the fruit as well as a significant influence of productive area.


Assuntos
Antioxidantes , Opuntia , Frutas/química , Sementes/química , Minerais , Fenóis/análise , Sicília
3.
Plants (Basel) ; 11(23)2022 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-36501407

RESUMO

Durum wheat (Triticum turgidum spp. durum) is one of the most important grain crops cultivated across the Mediterranean Basin, where a strong return to local landraces cultivation is occurring to meet the market demand for high-quality food and low-input cropping systems. A characterisation of the long-term effect (10 years) of durum wheat landraces and modern cultivars on the potential and real weed flora is still lacking. Hence, a multilocation trial over 10 farms in Central-Eastern Sicily was carried out to investigate the repeated cultivation of several old landraces (OLD) and modern cultivars (MOD) on the abundance and diversity of weed flora. Overall, OLD was associated with a 47% reduction of the soil seedbank size and to -64% of the aboveground weed biomass compared to MOD. In addition, diversity indices pointed out a high similarity between MOD and OLD farm groups for the soil seedbank, while a lower diversity was found in OLD for aboveground weed communities. From the principal component analysis emerged that the species compositions of MOD and OLD were quite separated for both soil seedbank and real flora, with the latter showing few specific associations with major weeds. These findings demonstrated the indirect effect of durum wheat landraces in sustainably reducing weed pressure without the adoption of chemical weed control.

4.
Plants (Basel) ; 11(14)2022 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-35890480

RESUMO

Increasing interest has been shown in globe artichoke for pharmaceutical and food applications as a significant source of polyphenol compounds. With the aim to improve the polyphenol profile of globe artichoke, an open-field experiment is set up to study the effect of gibberellic acid (GA3) application on the cynaropicrin, caffeoylquinic acid and flavone levels of three genotypes ('Apollo', 'Tema 2000' and 'Violet de Provence'), along with crop earliness, yield and bio-morphological plant response. The results indicate that GA3 treatment is more effective in terms of total polyphenol and caffeoylquinic acid accumulation in 'Apollo', regardless of the plant parts analyzed. In particular, the leaves of 'Apollo' were the richest source of luteolin derivatives of 5-O- and 1,5-di-O-caffeoylquinic acids. On average across the genotypes, GA3 treatment favored the accumulation of apigenin derivatives in the floral stem, and caffeoylquinic acid and cynaropicrin in the leaves. From the perspective of yield, GA3 treatment allowed us to anticipate the first harvest in each genotype, while either maintaining ('Apollo', 'Violet de Provence') or enhancing ('Tema 2000') the fresh weight yield. In conclusion, this study could be interesting for promoting GA3 usage to ameliorate the globe artichoke nutraceutical profile and to anticipate the first harvest for fresh marketing without significant yield losses.

5.
Plants (Basel) ; 11(8)2022 Apr 08.
Artigo em Inglês | MEDLINE | ID: mdl-35448748

RESUMO

Durum wheat is one of the largest cultivated crops across Mediterranean areas. The high demand for sustainable crop productions, especially concerning weed management, is driving the return to local landraces. In the present work, the in vitro allelopathic effects of the extracts of three durum wheat landraces ('Timilia', 'Russello' and 'Perciasacchi') and a modern variety ('Mongibello'), obtained from three different plant parts (ears, stems and roots), were tested on seed germination (G) and mean germination time (MGT) of Portulaca oleracea L. and Stellaria. media (L.) Vill., two weeds commonly infesting wheat fields. In addition, the total polyphenol (TPC) and total flavonoid (TFC) content of extracts was determined. All extracts reduced G and increased MGT in both weeds compared to the control. The magnitude of phytotoxicity was strongly affected by the influence of genotype, plant part and extract dilution. Overall, the landraces 'Timilia' and 'Russello' showed the highest allelopathic effects, ear extracts were the most active, and the maximum extract dilution induced higher phytotoxicity. Extracts' TPC and TFC corroborated these results. The findings obtained here encourage the use of local landraces as a source of allelochemicals and suggest that they could be left on soil surface or soil-incorporated after harvest for a possible weed control.

6.
Foods ; 10(3)2021 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-33801354

RESUMO

Two globe artichoke genotypes, "Spinoso sardo" and "Opera F1", have been processed as ready-to-cook (RTC) slices and refrigerated at 4 °C for 12 days (i) to evaluate the suitability to be processed as RTC slices; (ii) to evaluate the effect of a Foeniculum vulgare essential oil (EO) emitter, within an active package system, to delay quality decay, thus extending shelf life; (iii) to estimate the impact of EO emitter on the sensory profile of the RTC slices after cooking. Results revealed that both globe artichoke genotypes possess a good attitude to be processed as RTC product. "Opera F1" showed the best performances for color parameters, texture and chemical indexes, while "Spinoso sardo" showed lower mass loss (ML) over the storage time. The addition of EO emitter slowed down the consumption of O2, better preserved texture when compared to the control and more effectively control polyphenol oxidase (PPO) activity and antioxidants' retention during the cold storage. Microbial counts in control globe artichoke RTC slices were significantly higher than those packed with EO emitter, confirming the inhibiting role played by EO of F. vulgare. In addition, the EO emitter did not influence negatively the sensory profile of RTC globe artichoke slices after microwave cooking.

7.
J Sci Food Agric ; 101(9): 3767-3777, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33300619

RESUMO

BACKGROUND: The utilization of Trifolium subterraneum L. cover crops may represent an innovative and efficient option in low-input and organic farming, especially in Mediterranean agroecosystems where low and irregular rainfall require frequent soil tillage and use of herbicides to reduce moisture losses and weed competitiveness. Since imbalances of soil macro- and micro-nutrients due to cover cropping establishment could be responsible for numerous problems in specialized orchards, such as disturbances in the normal tree growth and quality of fruits, the objective of this study was to investigate, the cumulative effects of a 3-years established T. subterraneum cover cropping, compared with a spontaneous flora and a conventional management (as a control), on the levels of mineral nutrients in the apricot leaves and fruits. RESULTS: Our findings indicated that T. subterraneum cover cropping tended to stimulate higher leaf macro- and micro-nutrients content than conventional management and flora spontaneous cover cropping. In addition, the presence of T. subterraneum cover cropping, especially with the incorporation of dead mulches into the soil, increased the content of potassium (K), nitrogen (N), calcium (Ca), iron (Fe) and manganese (Mn) in apricot fruits. CONCLUSION: Taking also into account the effects of T. subterraneum cover cropping on both the reduction of soil weed and enhancement of bacteria communities involved in the soil N-cycle, we may suggest its application in Mediterranean orchards as an eco-friendly alternative to synthetic herbicides for weed control and mineral N fertilizers, while enhancing the apricot tree nutritional status and fruit quality. © 2020 Society of Chemical Industry.


Assuntos
Produção Agrícola/métodos , Frutas/química , Prunus armeniaca/crescimento & desenvolvimento , Trifolium/crescimento & desenvolvimento , Fertilizantes/análise , Frutas/crescimento & desenvolvimento , Nitrogênio/metabolismo , Estado Nutricional , Prunus armeniaca/química , Solo/química
8.
Plants (Basel) ; 9(11)2020 Nov 06.
Artigo em Inglês | MEDLINE | ID: mdl-33172153

RESUMO

Cover crops are gaining in popularity as an eco-friendly tool for weed control in organic and low-input agricultural systems. A 5-year study was carried out in a Mediterranean environment (Sicily, south Italy) to (1) quantify cover crop biomass production and (2) evaluate the effects on weed soil seed bank, aboveground biomass, species richness, species composition and associations between communities. Cover crop treatments included subterranean clover (Trifolium subterraneum L.) and spontaneous flora, both with and without burying dead mulch into the soil, compared to a conventional management treatment. Weed biomass was significantly reduced by subterranean clover, contrariwise to spontaneous flora, with season-dependent results. Cover crop biomass, which ranged from 44 to more than 290 g DW m-2, was negatively correlated to weed biomass. Moreover, subterranean clover decreased the size of the soil seed bank and species richness. Based on relative frequency, a low similarity was found between the conventional management and cover crop treatments. In addition, no significant differences in species composition across treatments were observed, whereas principal component analysis highlighted some associations. The results suggest that subterranean clover cover cropping is a good option for weed management in Mediterranean agroecosystems.

9.
J Agric Food Chem ; 68(43): 11946-11953, 2020 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-33052675

RESUMO

The work described here follows on from a previous study focused on the influence of the genotype and harvest time on the sesquiterpene lactone (STL) profile of Cynara cardunculus L. leaf extracts. The aim of this study was to investigate the effect that 60% plant shading in cultivated cardoon (C. cardunculus var. altilis) leaf extracts harvested in winter and spring had on the composition of STLs and the phytotoxicity. The phytotoxicity of leaf extracts was evaluated by assessing wheat coleoptile elongation along with seed germination and the root and shoot length of the weeds Amaranthus retroflexus L. and Portulaca oleracea L. Shading increased the production of STLs in spring, and this effect correlated positively with the phytotoxic activity. The induction of shading can therefore be used to modulate STL concentrations and their phytotoxic potential in cultivated cardoon leaves for industrial applications.


Assuntos
Cynara/química , Cynara/efeitos da radiação , Herbicidas/análise , Lactonas/química , Extratos Vegetais/química , Produção Agrícola , Cynara/metabolismo , Herbicidas/metabolismo , Herbicidas/farmacologia , Lactonas/metabolismo , Lactonas/farmacologia , Luz , Extratos Vegetais/metabolismo , Extratos Vegetais/farmacologia , Plantas Daninhas/efeitos dos fármacos , Plantas Daninhas/crescimento & desenvolvimento , Sementes/efeitos dos fármacos , Sementes/crescimento & desenvolvimento , Triticum/efeitos dos fármacos , Triticum/crescimento & desenvolvimento
10.
Food Microbiol ; 92: 103583, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32950167

RESUMO

Combined use of biocontrol agents and plant extracts can be considered a viable and promising strategy for protecting plant tissues with different synergistic mechanisms of action that improve the antimicrobial activity of the mixtures. Treatments of citrus fruits with Wickerhamomyces anomalus BS91 have been previously reported as effective measures to reduce the incidence of green mold caused by Penicillium digitatum. On the opposite, the knowledge of the antifungal activity of cultivated cardoon (Cynara cardunculus L. var. altilis DC.) leaf extract, vegetable widespread in some Mediterranean areas, is still very limited. In this study, experimental trials were conducted to evaluate the effectiveness in vitro of leaf aqueous, methanolic and ethanolic extracts of C. cardunculus against seven fungal pathogens responsible for considerable food losses in the postharvest stage. In addition, biocontrol yeast W. anomalus BS91 and the three C. cardunculus extracts were tested in vivo both as a single treatment and in mixture, against Penicillium digitatum on 'Tarocco' oranges and 'Femminello' lemons. The combination of W. anomalus BS91 and leaf ethanolic extract reduced with the highest efficacy the incidence and severity of green mold on orange and lemon fruits with respect to the control, and was more effective than treatment with antagonistic yeast or leaf extracts applied alone. Incidence and severity of citrus decay were more consistently reduced when mixtures were applied 24 h before the inoculation of the pathogen, thus suggesting the relevance of preventive treatments. The mixtures of antagonistic W. anomalus BS91 and ethanolic leaf extract were more effective in controlling green mold decay on oranges than on lemons. These results indicate that biocontrol agents and leaf extracts, used in appropriate combination, can provide a stronger protection than when used singularly. However, compatibility between microbial antagonist and antimicrobial extract should be preliminary verified.


Assuntos
Antibiose , Citrus/microbiologia , Conservação de Alimentos/métodos , Extratos Vegetais/farmacologia , Saccharomycetales/fisiologia , Agentes de Controle Biológico/farmacologia , Citrus/química , Cynara/crescimento & desenvolvimento , Cynara/fisiologia , Conservação de Alimentos/instrumentação , Frutas/microbiologia , Penicillium/efeitos dos fármacos , Penicillium/crescimento & desenvolvimento , Penicillium/fisiologia , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle
11.
Environ Res ; 185: 109427, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32247150

RESUMO

Soil pollution from heavy metals poses a serious risk for environment and public health. Phytoremediation is an eco-friendly and cheaper alternative compared to chemical-physical techniques. We carried out in vitro tests where three microorganisms Trichoderma harzianum, Saccharomyces cerevisiae and Wickerhamomyces anomalus were exposed to eight different heavy metals (one metal at a time) in order to evaluate resistance, growth and bioaccumulation capability for each metal (Ni, Cd, Cu, V, Zn, As, Pb, Hg). Taking into account the natural characteristics of T. harzianum, (resistance to environmental stress, resistance to pathogenic fungi, ability to establish symbiotic relationships with superior green plants) and the good bioaccumulation capacity for V, As, Cd, Hg, Pb shown after in vitro tests, it was chosen as a microorganism to be used in greenhouse tests. Controlled exposure tests were performed in greenhouse, where Arundo donax and mycorrhized Arundo donax with T. harzianum were exposed for 7 months at two different doses (L1 and L2) of a heavy metal mix, so as to assess whether the symbiotic association could improve the bioaccumulation capability of the superior green plant A. donax. Heavy metals were determined with ICP-MS. The average bioaccumulation percentage values of A. donax for L1 and L2 were, respectively: Ni (31%, 26%); Cd (35%, 50%); Cu (30%, 35%); As (19%, 27%); Pb (18%, 14%); Hg (42%, 45%); V (39%, 26%); Zn (23%, 9%). The average bioaccumulation percentage values of mycorrhized A. donax with T. harzianum for L1 and L2 were, respectively: Ni (27%, 38%); Cd (44%, 42%); Cu (36%, 29%); As (17%, 23%); Pb (37%, 54%); Hg (44%, 60%); V (16%, 20%); Zn (14%, 7%). A. donax showed the highest BAF (bioaccumulation factor) for Cd (0.50), Cu (0.35), As (0.27) and Hg (0.45) after exposure to L2; mycorrhized A. donax with T. harzianum showed the highest BAF for Ni (0.38), Cd (0.42), Pb (0.54) and Hg (0.60) after exposure to L2. A. donax showed the highest TF (translocation factor) values for Cd (0.28) and Hg (0.26) after exposition at L1 and L2 respectively; A. donax mycorrhized with T. harzianum showed the highest TF values for Cd (0.70), As (0.56), V (0.24), Pb (0.18) after exposition at L2, and Zn (0.30) after exposition at L1. Our study showed a good growth capability in contaminated soils and a good bioaccumulation capability of heavy metals, both for A. donax and mycorrhized A. donax with T. harzianum. Furthermore, for three metals (Ni, Pb and Hg) the bioaccumulation capability was improved by the symbiosis of T. harzianum with A. donax. So, these results proved the suitability both for A. donax and mycorrhized A. donax with T. harzianum for phytoremediation processes.


Assuntos
Metais Pesados , Poluentes do Solo , Biodegradação Ambiental , China , Monitoramento Ambiental , Metais Pesados/análise , Metais Pesados/toxicidade , Poaceae , Solo , Poluentes do Solo/análise , Poluentes do Solo/toxicidade
12.
J Agric Food Chem ; 67(23): 6487-6496, 2019 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-31094509

RESUMO

The excessive and inappropriate application of herbicides has caused environmental pollution. The use of allelochemicals as bioherbicides could provide a solution to this problem. The allelopathic activity of Cynara cardunculus L. has been studied previously, and sesquiterpene lactones (STLs) were identified as the most relevant allelochemicals. The goal of the study reported here was to investigate the effect of six genotypes and three harvest times on the qualitative and quantitative composition of STLs in C. cardunculus leaves through a new ultra-high-performance liquid chromatography-tandem mass spectrometry analysis method and, thus, the effect on phytotoxicity. Overall, wild cardoon contained the highest levels of STLs of the three botanical varieties studied. Nevertheless, climatic conditions had a marked influence on the presence of STLs among the six genotypes, which was higher in the April harvest. Cynaropicrin was the most abundant STL detected. A close relationship was found between the STL profiles and the allelopathic activity, expressed as inhibition of wheat coleoptile elongation. The data provide a new and important contribution to our understanding of C. cardunculus allelopathy.


Assuntos
Cynara/crescimento & desenvolvimento , Cynara/genética , Lactonas/química , Extratos Vegetais/química , Sesquiterpenos/química , Cromatografia Líquida de Alta Pressão , Cynara/química , Cynara/metabolismo , Genótipo , Lactonas/metabolismo , Espectrometria de Massas , Feromônios/química , Feromônios/metabolismo , Extratos Vegetais/metabolismo , Folhas de Planta/química , Folhas de Planta/genética , Folhas de Planta/crescimento & desenvolvimento , Folhas de Planta/metabolismo , Sesquiterpenos/metabolismo , Fatores de Tempo
13.
J Sci Food Agric ; 99(11): 5219-5228, 2019 Aug 30.
Artigo em Inglês | MEDLINE | ID: mdl-31049967

RESUMO

BACKGROUND: The globe artichoke [Cynara cardunculus var. scolymus (L.) Fiori] is a natural source of minerals, fiber, inulin, and polyphenols. A ready-to-cook (RTC) version of this product could improve its commercialization and consumption. In this study, the effects of (i) anti-browning treatments (citric acid 0.5% + ascorbic acid 2%, or cysteine 0.5%, w/v) and (ii) dipping in locust bean gum (LBG) edible coating with or without Foeniculum vulgare essential oil (EO) were evaluated on RTC globe artichoke slices cv. 'Spinoso sardo' during storage (11 days at 4 °C). Fresh weight loss, color, texture, polyphenol oxidase (PPO), microbiological and chemical parameters, antioxidant capacity, and sensory descriptors were determined. RESULTS: The results showed that, despite the antioxidant treatment used, when EO was added to LBG, all microbiological groups underwent an average reduction of 0.50 log CFU g-1 . Cysteine preserved the antioxidant capacity, color, and texture of samples better than citric acid and ascorbic acid, and inhibited PPO; the addition of EO to LBG enhanced these effects. At the end of the storage period, the overall highest sensory attribute score was attained by the coated globe artichoke samples with EO. CONCLUSION: The marked efficacy of the LBG edible coating with added F. vulgare EO in maintaining microbiological, physical, chemical, and sensory qualities makes it a promising processing tool for the preservation of ready-to-cook Spinoso sardo globe artichoke slices during storage for 11 days at 4 °C. © 2019 Society of Chemical Industry.


Assuntos
Cynara scolymus/química , Fast Foods/análise , Foeniculum/química , Aditivos Alimentares/análise , Conservação de Alimentos/métodos , Óleos Voláteis/análise , Óleos de Plantas/análise , Cor , Culinária , Conservação de Alimentos/instrumentação , Humanos , Polifenóis/análise , Paladar
14.
Food Res Int ; 100(Pt 2): 95-99, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28888464

RESUMO

Globe artichoke is a proven source of various minerals (such as K, Fe and Zn) in the Mediterranean diet, but their content in response to fertilizer regime has not yet been investigated sufficiently. Thus, we monitored the effect of two contrasting nitrogen/phosphorus/potassium (NPK) fertilizer regimes (one balanced and the other excessive) on the minerals accumulation of 'Apollo' and 'Tema 2000' cultivars, grown in three Sicilian locations ('Landolina', 'Iannarello' and 'Zotto') - South Italy. Except for total nitrogen, the balanced fertilizer regime favoured the accumulation of both macro- and micro-minerals, but with a different extent depending especially on trial location. Particularly, plants grown at 'Iannarello' responded more strongly to the fertilizer regime with respect to K, P, Ca, Fe and Zn accumulation, as a result of its different soil characteristics than the other locations. Providing a balanced supply of nitrogen/phosphorus/potassium via fertilization can enhance the nutritive value of globe artichoke, but taking into account especially soil characteristics.


Assuntos
Cynara scolymus/química , Fertilizantes/análise , Oligoelementos/análise , Análise de Alimentos , Itália , Nitrogênio/análise , Fósforo/análise , Potássio/análise , Solo/química
15.
Food Res Int ; 99(Pt 1): 385-392, 2017 09.
Artigo em Inglês | MEDLINE | ID: mdl-28784496

RESUMO

The commercial importance of plant tissue culture has grown in recent years, reflecting its application to vegetative propagation, disease elimination, plant improvement and the production of polyphenols. The level of polyphenols present in plant tissue is influenced by crop genotype, the growing environment, the crop management regime and the post-harvest processing practice. Globe artichoke is a significant component of the Mediterranean Basin agricultural economy, and is rich in polyphenols (phenolic acids and flavones). Most commercially grown plants are derived via vegetative propagation, with its attendant risk of pathogen build-up. Here, a comparison was drawn between the polyphenol profiles of conventionally propagated and micropropagated/mycorrhized globe artichoke plants. Micropropagation/mycorrhization appeared to deliver a higher content of caffeoylquinic acids. The accumulation of these compounds, along with luteolin and its derivatives, was not season-dependent. Luteolin aglycone was accumulated preferentially in the conventionally propagated plants. Overall, it appeared that micropropagation/mycorrhization enhanced the accumulation of polyphenols.


Assuntos
Antioxidantes/metabolismo , Produtos Agrícolas/metabolismo , Técnicas de Cultura , Cynara scolymus/metabolismo , Flores/metabolismo , Micorrizas/metabolismo , Polifenóis/metabolismo , Produtos Agrícolas/crescimento & desenvolvimento , Cynara scolymus/crescimento & desenvolvimento , Flores/crescimento & desenvolvimento , Micorrizas/crescimento & desenvolvimento , Ácido Quínico/análogos & derivados , Ácido Quínico/metabolismo , Estações do Ano , Fatores de Tempo , Regulação para Cima
16.
Sci Rep ; 7(1): 5617, 2017 07 17.
Artigo em Inglês | MEDLINE | ID: mdl-28717205

RESUMO

The genome sequence of globe artichoke (Cynara cardunculus L. var. scolymus, 2n = 2x = 34) is now available for use. A survey of C. cardunculus genetic resources is essential for understanding the evolution of the species, carrying out genetic studies and for application of breeding strategies. We report on the resequencing analyses (~35×) of four globe artichoke genotypes, representative of the core varietal types, as well as a genotype of the related taxa cultivated cardoon. The genomes were reconstructed at a chromosomal scale and structurally/functionally annotated. Gene prediction indicated a similar number of genes, while distinctive variations in miRNAs and resistance gene analogues (RGAs) were detected. Overall, 23,5 M SNP/indel were discovered (range 6,34 M -14,50 M). The impact of some missense SNPs on the biological functions of genes involved in the biosynthesis of phenylpropanoid and sesquiterpene lactone secondary metabolites was predicted. The identified variants contribute to infer on globe artichoke domestication of the different varietal types, and represent key tools for dissecting the path from sequence variation to phenotype. The new genomic sequences are fully searchable through independent Jbrowse interfaces (www.artichokegenome.unito.it), which allow the analysis of collinearity and the discovery of genomic variants, thus representing a one-stop resource for C. cardunculus genomics.


Assuntos
Mapeamento Cromossômico/métodos , Cynara/genética , Genoma de Planta , Análise de Sequência de DNA/métodos , Evolução Molecular , Genótipo , Mutação INDEL , Internet , Mutação de Sentido Incorreto , Melhoramento Vegetal , Polimorfismo de Nucleotídeo Único
17.
J Sci Food Agric ; 97(2): 650-658, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27144811

RESUMO

BACKGROUND: Although nitrogen (N) fertilisation is essential for promoting crop yield, it may also affect the produce quality. Here, the influence of three N fertiliser rates (0 kg ha-1 as a control, 200 kg ha-1 and 400 kg ha-1 referred to as N0 , N200 and N400, respectively) on the overall quality of minimally processed globe artichoke heads was investigated during refrigerated storage for 12 days. RESULTS: Throughout the storage time, N fertilised samples had higher inulin contents than those unfertilised. In addition, the respiratory quotient of N200 and N400 samples was 2-fold and 2.5-fold lower than N0 ones, whose values were close to the normal range for vegetables. All the samples reported good microbiological standards, although N200 and N400 achieved lower mesophilic and psychotropic counts than N0 throughout the storage time. After 8 and 12 days of refrigerated storage, the N200 samples showed the highest scores of positive sensory descriptors. CONCLUSION: A fertiliser level of 200 kg N ha-1 is suitable for obtaining minimally processed globe artichoke heads with good nutritional, sensory and microbiological quality, characterised by low endogenous oxidase activities. Proper packaging systems and procedures are, however, crucial for extending the product shelf-life and, thus, promoting its exportation on a wider scale. © 2016 Society of Chemical Industry.


Assuntos
Produção Agrícola , Produtos Agrícolas/química , Cynara scolymus/química , Fertilizantes , Flores/química , Qualidade dos Alimentos , Ciclo do Nitrogênio , Carga Bacteriana , Catecol Oxidase/metabolismo , Respiração Celular , Produtos Agrícolas/crescimento & desenvolvimento , Produtos Agrícolas/metabolismo , Produtos Agrícolas/microbiologia , Cynara scolymus/crescimento & desenvolvimento , Cynara scolymus/metabolismo , Cynara scolymus/microbiologia , Carboidratos da Dieta/análise , Flores/crescimento & desenvolvimento , Flores/metabolismo , Flores/microbiologia , Manipulação de Alimentos , Armazenamento de Alimentos , Bactérias Gram-Negativas/crescimento & desenvolvimento , Bactérias Gram-Negativas/isolamento & purificação , Bactérias Gram-Positivas/crescimento & desenvolvimento , Bactérias Gram-Positivas/isolamento & purificação , Inulina/análise , Inulina/biossíntese , Valor Nutritivo , Pigmentos Biológicos/análise , Pigmentos Biológicos/biossíntese , Pigmentos Biológicos/metabolismo , Proteínas de Plantas/metabolismo , Refrigeração , Sensação , Propriedades de Superfície
19.
Sci Rep ; 6: 19427, 2016 Jan 20.
Artigo em Inglês | MEDLINE | ID: mdl-26786968

RESUMO

Globe artichoke (Cynara cardunculus var. scolymus) is an out-crossing, perennial, multi-use crop species that is grown worldwide and belongs to the Compositae, one of the most successful Angiosperm families. We describe the first genome sequence of globe artichoke. The assembly, comprising of 13,588 scaffolds covering 725 of the 1,084 Mb genome, was generated using ~133-fold Illumina sequencing data and encodes 26,889 predicted genes. Re-sequencing (30×) of globe artichoke and cultivated cardoon (C. cardunculus var. altilis) parental genotypes and low-coverage (0.5 to 1×) genotyping-by-sequencing of 163 F1 individuals resulted in 73% of the assembled genome being anchored in 2,178 genetic bins ordered along 17 chromosomal pseudomolecules. This was achieved using a novel pipeline, SOILoCo (Scaffold Ordering by Imputation with Low Coverage), to detect heterozygous regions and assign parental haplotypes with low sequencing read depth and of unknown phase. SOILoCo provides a powerful tool for de novo genome analysis of outcrossing species. Our data will enable genome-scale analyses of evolutionary processes among crops, weeds, and wild species within and beyond the Compositae, and will facilitate the identification of economically important genes from related species.


Assuntos
Cruzamento , Cynara scolymus/genética , Genoma de Planta , Sequenciamento de Nucleotídeos em Larga Escala , Mapeamento Cromossômico , Biologia Computacional/métodos , DNA Satélite , Genômica/métodos , MicroRNAs/genética , Repetições de Microssatélites , Anotação de Sequência Molecular , Família Multigênica , Sequências Repetitivas de Ácido Nucleico
20.
Front Plant Sci ; 5: 800, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25653660

RESUMO

The dietary value of many plant polyphenols lies in the protection given against degenerative pathologies. Their in planta role is associated with the host's defense response against biotic and abiotic stress. The polyphenol content of a given plant tissue is strongly influenced by the growing environment, but is also genetically determined. Plants belonging to the Cynara cardunculus species (globe artichoke and the cultivated and wild cardoon) accumulate substantial quantities of polyphenols mainly mono and di-caffeoylquinic acid (CQA) in their foliage. Transgressive segregation for CQA content in an F1 population bred from a cross between a globe artichoke and a cultivated cardoon led to the selection of eight segregants which accumulated more CQA in their leaves than did those of either of their parental genotypes. The selections were grown over two seasons to assess their polyphenol profile (CQAs, apigenin and luteolin derivatives and narirutin), and were also fingerprinted using a set of 217 microsatellite markers. The growing environment exerted a strong effect on polyphenol content, but two of the selections were able to accumulate up to an order of magnitude more CQA than either parent in both growing seasons. Since the species is readily vegetatively propagable, such genotypes can be straightforwardly exploited as a source of pharmaceutically valuable compounds, while their SSR-based fingerprinting will allow the genetic identity of clonally propagated material to be easily verified.

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